That's actually an urban legend oft-repeated on the interwebs of a thousand lies.
The term goes back to Thomas Edison, circa 1873, and he has plenty of prior use of it. What Hopper did in 1947 was to tape the remnants of a moth trapped in the Harvard Mark II into the operator log book with a note “First actual case of bug being found”.
It happened once, and it was not a common occurrence as it is not elsewhere documented.