I sat down this afternoon and took another look at Brad's 1250. Turns out the (other) trouble was on the stabilizer board. Q4 (+25V regulator) was opening up and throwing the tone amp (and the flat amp, and the filter amp) into a tizzy whenever it would change states. Then things would settle down, it would come out of protect and play, sometimes for days. D2 was a questionable, and I replaced it, too. Furthermore, there were plenty of cracked solder joints, some (most) of which had to be cleaned off, the leads roughed up, and then fluxed and soldered, otherwise the oxidation on the leads wouldn't take any solder and would cause an open condition, which was giving me fits.
I went ahead and re-capped the board while I was at it, I wasn't about to have a cap go T/U and undo the whole damn thing.