On varactor tuned units like the the ST-J88B, the C values on the PLL board are important. I would not recommend substituting / increasing values for caps like C513, C517, C518 or C519. I would test the tuner before replacing any of those, and after.
This model uses 6 ceramic filters, so I would look at distortion in wide and narrow separately. If the distortion in either W or N IF path can't meet specs after adjustment, this is likely the place to explore (bad/off spec ceramic filters). People have been buying (hoarding?) ceramic filters for years as they are now out of production, but there are many out there, so likely still available.