It looks like the inverted polarity has been done on the crossover board. The Blue wire is connected to the neg trace - I'm guessing that goes to the + on the tweeter. If that's how you have them connected, you should be good to go. If you reversed them, try swapping the leads and see if things sound any better.
If you are still not happy with the sound, you can try adding some series resistance inline with the tweeter after the crossover to tame the brightness. I would probably try a few different small values, like 0.5 - 2 ohms, until it sounds right. Cheap enough to buy a few different values.
Now adding that extra resistance will change the overall impedance seen by the network, so it will change the slope and final response too. Hopefully for the better. That's the way it goes when replacing an NLA driver in a known design. Without the exact same tweeter, they will never sound the same due to many factors coming into play. That's also why off the shelf crossovers or simple online calculators almost never provide great results.