Well now... that is a bit perplexing and clearly your "pair" has one speaker each of two different iterations of the Rect-III. This is just as we suspected, and the possibility of different cap values for the mid driver was mentioned in posts #63, 70, and 79. The smaller cap value (60uF) results in a slightly higher crossover frequency, and I assume this was fully intentional in order for the mid to blend with that particular woofer.
The rotary controls appear to be from different suppliers but this should be of no concern. Also, the RH speaker has an additional resistor - - again, most likely you should leave "as-is". The most curious thing is the significant difference in wiring, and it is difficult to assess this without having schematic circuits drawn up. To put your mind at ease (and simply for additional information), you might spend some time sifting through the many AK threads on the Rect-III to try to confirm similar circuit arrangements.
Good to see that you were able to remove the x-o boards, but I'm surprised you did not confirm the silver cap (60uF) before ordering parts for both cabinets. My suggestion would be: replace both striped caps with new 2.2uF caps; replace the black cap with some parallel combination to make new 90uF; replace the silver cap with parallel combination to make new 60uF; and spray/clean the rotary controls. Re-attach all loose wires, replace internal stuffing, re-assemble baffle boards, then plug-n-play.
More experienced Rect-III owners may have better or more specific advice, but you might drive yourself nuts trying to fully understand the variations in these two specimens. They are slightly different speakers designed to the same standards, so it'd be best to replace any removed components with "like" values.